rs30674800 SNP Detail

Summary

• ID
  rs30674800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71520734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT GTAGGCAATA AATATCTTAA
  R
  AGTTACTTCT ATACTTCACT TAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47971100	NES11901945	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	G	G		G	G	G	G		A
ss321818030	CHEV_6_71493744	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30674800					SNP	G	G	G	G	G	A	A	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971100	NES11901945	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71520734 () rs orientation: forward

Symbol	Name	Function Class
1700040L08Rik	RIKEN cDNA 1700040L08 gene	within coordinates
Chmp3	charged multivesicular body protein 3	86 bp upstream
Cpgi17526	CpG island 17526	within coordinates
Rr399696	regulatory region 399696	within coordinates
Rr631970	regulatory region 631970	within coordinates
Rr631971	regulatory region 631971	354 bp proximal
Tssr57031	transcription start site region 57031	93 bp upstream
Tssr57032	transcription start site region 57032	121 bp upstream
Tssr57033	transcription start site region 57033	150 bp upstream
Tssr57034	transcription start site region 57034	225 bp upstream
Tssr57035	transcription start site region 57035	592 bp upstream
Tssr57036	transcription start site region 57036	1483 bp upstream