rs30675107 SNP Detail

Summary

• ID
  rs30675107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56481495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTAAAA CTGTCAAGAG
  TAAACAAGCA ACAACAATTC CTCTCTGGTT CTCACTTCCT GAAACACTAA TAGCTCCCTA
  GATTGGCCCT TTGGGAGAAG AGAGGCCTGC GCAGTTTTTT GTAAGTAATA AGTTTTGGAT
  GTAATTTTGT ACTTGTATTT TTCCCCTTCT CATCACAGTA ACAATTAAGC TCTGAGGCTT
  Y
  CTAATATTTC TTTTAATTGA TCTCTATACT GTTTTGTAGA AGATATTAAT CATCAGCTCC
  TTCCATTCAA TTCGAAATTT GTTTTTAAAG AGGAAGCTAA ATATTAAAAG ATCTCTCTCT
  CTCTCTCTCT TACTCTCACA CACAGAGATA TAATATTTTA TCATGAGTTT TCTCCTCTAA
  GATGTGATAT GGTTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46972020	NES10793601	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30675107					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972020	NES10793601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56481495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13194	CpG island 13194	1400 bp proximal
Rr577050	regulatory region 577050	1375 bp proximal
Tssr29179	transcription start site region 29179	1432 bp upstream
Tssr29180	transcription start site region 29180	1586 bp upstream
Tssr29181	transcription start site region 29181	1616 bp upstream