rs30675109 SNP Detail

Summary

• ID
  rs30675109
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56481543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCACTTC CTGAAACACT
  AATAGCTCCC TAGATTGGCC CTTTGGGAGA AGAGAGGCCT GCGCAGTTTT TTGTAAGTAA
  TAAGTTTTGG ATGTAATTTT GTACTTGTAT TTTTCCCCTT CTCATCACAG TAACAATTAA
  GCTCTGAGGC TTTCTAATAT TTCTTTTAAT TGATCTCTAT ACTGTTTTGT AGAAGATATT
  M
  ATCATCAGCT CCTTCCATTC AATTCGAAAT TTGTTTTTAA AGAGGAAGCT AAATATTAAA
  AGATCTCTCT CTCTCTCTCT CTTACTCTCA CACACAGAGA TATAATATTT TATCATGAGT
  TTTCTCCTCT AAGATGTGAT ATGGTTGTGT GTATGTGTGT GATCTATAAT GAAAACGCAG
  AAGAGAGACC CAACTCAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46972022	NES10793602	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30675109					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972022	NES10793602	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56481543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13194	CpG island 13194	1352 bp proximal
Rr577050	regulatory region 577050	1327 bp proximal
Tssr29179	transcription start site region 29179	1384 bp upstream
Tssr29180	transcription start site region 29180	1538 bp upstream
Tssr29181	transcription start site region 29181	1568 bp upstream