rs30675638 SNP Detail

Summary

• ID
  rs30675638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71521540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGACCA CCCGGAGGAC
  TTGCCCTAGA CCGGAAGGTT GTGTGCGGTG AACCGGGTCG GAGCCCCCAA AAAGTCCAGG
  CACCTGCCAG GCAGGTCCTT TTCTCGCTCT CCTCTGTGTG CAGGGAAGCC CGACTTGTGT
  TTATTCTAGA AGCTCAGTTC TCTCAGGCCC TACCCATAAG GATGCTACCG AAAACAGTTC
  R
  GATCCTACTC TGAATCCTTA GATCTGCCTA TCAATTGAGT TATTTTAGAA ACCAAGTATC
  AGCCGCCTAA GTTTGAGTCC TACTTTTAGA CGTCTCGGCT CTCTGATCTC GAAAAACTTG
  TCCGAGACTT CTCCTATGTC AAGTAGGAAG AGTGCTACCG CAGTAATTGA CCATTGAAGG
  ATGTGAAGTT TGAGCTAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47971110	NES11901950	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30675638					SNP	G	G	A	G	G	G	A	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971110	NES11901950	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71521540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700040L08Rik	RIKEN cDNA 1700040L08 gene			442 bp upstream
Chmp3	charged multivesicular body protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17526	CpG island 17526			within coordinates
Rr399696	regulatory region 399696			588 bp downstream
Rr631970	regulatory region 631970			629 bp distal
Rr631971	regulatory region 631971			within coordinates
Tssr57031	transcription start site region 57031			688 bp downstream
Tssr57032	transcription start site region 57032			658 bp downstream
Tssr57033	transcription start site region 57033			599 bp downstream
Tssr57034	transcription start site region 57034			570 bp downstream
Tssr57035	transcription start site region 57035			189 bp downstream
Tssr57036	transcription start site region 57036			677 bp upstream