rs30676704 SNP Detail

Summary

• ID
  rs30676704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71522349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTAGCTG TCAAGCCAGT
  CTAATTAACG TTGCCATTTT CCGGTGCGTG TTCTTTTTTT TTTTTTTTTT TAAGAGGGGT
  ACTTTACTAG AGGAGAAATT GACATTACAT TCTTAGCAAT GACACTTATT ATTTAAAATA
  ATGGAAACGT TAAACGAGTA ATGTACATAC CAGGCATAAG TTTAAATAGT AATAAGACTG
  Y
  TTTCTTTAGA CTATCTCAAC TTATGGATGA CAAAGCTAAA GCCACACACT AGTAATGATT
  TACTTATCTT CAAGAAGAGT ATACAAATAC CACAAAATGG TCTACATAAT GTTCTGAAGT
  GAAATTGTAT GCTTGTCTCA TTTAAGTTCC ACATGTTCAG TTTTATACGA GAGAGCAAAA
  TGTAACAGGT GAATGAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47971116	NES11901776	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30676704					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971116	NES11901776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71522349 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700040L08Rik	RIKEN cDNA 1700040L08 gene			1251 bp upstream
Chmp3	charged multivesicular body protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17526	CpG island 17526			746 bp distal
Rr399696	regulatory region 399696			1397 bp downstream
Rr631970	regulatory region 631970			1438 bp distal
Rr631971	regulatory region 631971			761 bp distal
Tssr57031	transcription start site region 57031			1497 bp downstream
Tssr57032	transcription start site region 57032			1467 bp downstream
Tssr57033	transcription start site region 57033			1408 bp downstream
Tssr57034	transcription start site region 57034			1379 bp downstream
Tssr57035	transcription start site region 57035			998 bp downstream
Tssr57036	transcription start site region 57036			125 bp downstream