rs30676710 SNP Detail

Summary

• ID
  rs30676710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71522540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGACTGT TTTCTTTAGA
  CTATCTCAAC TTATGGATGA CAAAGCTAAA GCCACACACT AGTAATGATT TACTTATCTT
  CAAGAAGAGT ATACAAATAC CACAAAATGG TCTACATAAT GTTCTGAAGT GAAATTGTAT
  GCTTGTCTCA TTTAAGTTCC ACATGTTCAG TTTTATACGA GAGAGCAAAA TGTAACAGGT
  R
  AATGAAAGTT CTTAATAAGA AAAGGTTTTA AGAGATGCAG TGTGGCCTGC AGTTCAGCTG
  CTTGGTCATT TTCAGGACAT TCCTGAAAGC AAGAGTTCAA GGGCAGACTA GACAGTGGCT
  CAGAAAGCAA AGATTTTTCG GGAAAGTCTG GGTGTTGTAG TTTCTGAGAC ATTACCATGC
  ATTCGTTTTA AAAATTTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47971122	NES11901779	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G	A	G	G	A	A		A	G	A	G
ss133276479	ENSMUSSNP2949794	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30676710					SNP	G	G	G	A	G	G	G	A	G	G	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971122	NES11901779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71522540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700040L08Rik	RIKEN cDNA 1700040L08 gene			1442 bp upstream
Chmp3	charged multivesicular body protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17526	CpG island 17526			937 bp distal
Rr399696	regulatory region 399696			1588 bp downstream
Rr631970	regulatory region 631970			1629 bp distal
Rr631971	regulatory region 631971			952 bp distal
Tssr57031	transcription start site region 57031			1688 bp downstream
Tssr57032	transcription start site region 57032			1658 bp downstream
Tssr57033	transcription start site region 57033			1599 bp downstream
Tssr57034	transcription start site region 57034			1570 bp downstream
Tssr57035	transcription start site region 57035			1189 bp downstream
Tssr57036	transcription start site region 57036			316 bp downstream