rs30677228 SNP Detail

Summary

• ID
  rs30677228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71660275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGTTTT CATGCTTTGC
  TCCTGAGCCT TGTAGCTGAT GCAGAAGTCA GGAACACAGA CGGTATGGAG GAACCAAGGC
  TAAACCTGGA GGGAGCTGCG GGTGGTCTCT CTATCTTAAG ACTAACACAT TCTCCCATAA
  CAAGCAAAAT CAGAGTAGCT TAAAGAACGG AAATTCGGTC TTTCCTTTCG CTGCTGCATC
  Y
  GCAGCCATGA GTATGCTCAG GCTAGAGAAG GGGCTTGCCT CTAGTGTCCT CTGCTGTGGG
  AAAAAGAAGG TCTGATTGGA TCCCAATAAG ACCAATGAAA TCGTCAATGC CAACTCCTGT
  CAGCAGATCA GAAAGCTGAT CAAAGACGGG CTGATCATCT GGAAGCCTGT GACTGTCCAT
  TCCCGGGCTG GAAAAACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47971938	NES11919993	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30677228					SNP	C	C	T	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971938	NES11919993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71660275 () rs orientation: forward

Symbol	Name	Function Class
Rpl19-ps9	ribosomal protein L19, pseudogene 9	7 bp upstream
Tssr57037	transcription start site region 57037	21 bp downstream