rs30678429 SNP Detail

Summary

• ID
  rs30678429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117496537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAA GCTTTAAGAC ATTGTGTAAA
  Y
  TTCTTGGCCT GGCTTAGGTT GCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46431983	mCV24800317	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss138889667	ENSMUSSNP7041183	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss324202003	CHEV_12_118771390	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30678429					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117496537 () rs orientation: forward

Symbol	Name	Function Class
2900082C11Rik	RIKEN cDNA 2900082C11 gene	624 bp downstream
Cpgi5227	CpG island 5227	638 bp proximal
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates
Rr474129	regulatory region 474129	263 bp proximal
Rr474130	regulatory region 474130	1012 bp proximal
Rr474131	regulatory region 474131	1771 bp proximal
Tssr115537	transcription start site region 115537	940 bp upstream
Tssr115538	transcription start site region 115538	1003 bp upstream
Tssr115539	transcription start site region 115539	1029 bp upstream