rs30679119 SNP Detail

Summary

• ID
  rs30679119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117498938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATA ATTTTTAAGT CAGCCACCAG
  R
  AAAGTTTTAG AATTGCCCAC ACAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46434026	mCV24529243	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss138889694	ENSMUSSNP2921406	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss324202015	CHEV_12_118773791	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30679119					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117498938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5227	CpG island 5227	563 bp distal
Gm60307	predicted gene, 60307	within coordinates
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates
Tssr115537	transcription start site region 115537	1408 bp downstream
Tssr115538	transcription start site region 115538	1376 bp downstream
Tssr115539	transcription start site region 115539	1362 bp downstream