rs30679821 SNP Detail

Summary

• ID
  rs30679821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70442425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC CCGTTCCCGC CACCCGTTCC
  Y
  GCAGCCCTCA CCGCTGCTGC CTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss39210281	mCV24337827	ABI	CRAMUS_MOUSE	f	SNP	T	C					C
ss51532210	NES14630568	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		T	C	C	T	C	C	C
ss139681789	ENSMUSSNP3059097	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30679821					SNP	T	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532210	NES14630568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70442425 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6688	CpG island 6688			651 bp proximal
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			348 bp upstream
Rr494880	regulatory region 494880			846 bp distal
Rr494881	regulatory region 494881			within coordinates
Rr494882	regulatory region 494882			261 bp proximal
Rr494883	regulatory region 494883			359 bp proximal
Rr494884	regulatory region 494884			1036 bp proximal
Rr494885	regulatory region 494885			1172 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			1569 bp downstream
Tssr126404	transcription start site region 126404			195 bp upstream
Tssr126405	transcription start site region 126405			249 bp upstream
Tssr126406	transcription start site region 126406			268 bp upstream
Tssr129550	transcription start site region 129550			1523 bp upstream
Tssr129551	transcription start site region 129551			1510 bp upstream
Tssr129552	transcription start site region 129552			1496 bp upstream
Tssr129553	transcription start site region 129553			850 bp downstream
Tssr129554	transcription start site region 129554			897 bp downstream
Tssr129555	transcription start site region 129555			1009 bp downstream
Tssr129556	transcription start site region 129556			1062 bp downstream
Tssr129557	transcription start site region 129557			1106 bp downstream
Tssr129558	transcription start site region 129558			1135 bp downstream