rs30680870 SNP Detail

Summary

• ID
  rs30680870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71734469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA GAGTGGCAGC TCATTCATTT
  Y
  GAGTGAGACC TAACTGACAA GTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47972730	NES11915225	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	C	C	C	T		T	C	T		C
ss133277102	ENSMUSSNP6918580	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321818273	CHEV_6_71707479	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30680870					SNP	T	T	T	C	T	T	C	C	C	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47972730	NES11915225	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71734469 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	2 bp downstream
Rr368099	regulatory region 368099	177 bp upstream
Rr631995	regulatory region 631995	within coordinates
Rr631996	regulatory region 631996	349 bp distal
Rr631997	regulatory region 631997	1347 bp proximal