rs30680939 SNP Detail

Summary

• ID
  rs30680939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56630753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATATGGAA GGAGAATGTT
  CACATTGGTC CTATTTGGGT TTGTGGGTTT AAGATGATAA TCTATAATAA TACTTCATTT
  TGTGGAATTC TAAATTCTAT GGGATGAATT TATACTTGCT CTCAGATGTA ATCCTTACAT
  AGTCTCTTTT TTTAGGGATA GGTTGTTTTT TCTGTAGTAT AAATTAGGAA ATGGAGGCTA
  S
  GAAAACAAGA ATACAAGAAT AGAATACAAG GTCACACATT TTGCCAATAT ATCTGTAACC
  ATCATAAAAA TTCTTCTTTC CATACAAGAG GTATATTACA CTTTTATTGT ATGTATGTAT
  ATCTATATCT ATATATCTAT ATCTATATAT GTATATATAT ATACACACAC ATACACACAT
  ATATAATTAT ATATTTGTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46973418	NES10791380	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30680939					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46973418	NES10791380	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56630753 () rs orientation: forward

Symbol	Name	Function Class
Rr75870	regulatory region 75870	1140 bp proximal
Rr375009	regulatory region 375009	1579 bp downstream
Rr375010	regulatory region 375010	1156 bp upstream