rs30681077 SNP Detail

Summary

• ID
  rs30681077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:20192157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATACGG TCCAGTTGGT
  TAATAAACAC TTCAGAGGTT TGGTAACTAT CCTTGGGGGC CTGTGCCCCA GCCTCCTCAC
  CAAGTGGCCT TGACACATGT CCCTTGTTTT TTAGAGTCTG AGATACCTCT TCCAAGCTGG
  GCACCCGATT CTTGGAATAG ACCACCAAAG GTGCCAGGGA TGCAGGGATG GTGGGTAGTC
  Y
  ATCCCCTTGA GGTCCCAGCC CGTGTCCAGG TCCTGGGACC CTCTCCCCTC CCCCACTTGT
  TTTCATTGCC TTCTTCCCAA TCTGTTTGAT GAGGTCATTG TAGGTCTCCT CCTTTTTGGA
  TAGGAAGCTG AAGATGTTGA CGTCCTTGGA TGCTGTACTT CCAGCCATCT GTAGGGCCTT
  CCGGGAGTGT GGAGAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss49160043	NES12454709	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs30681077					SNP	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49160043	NES12454709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20192157 () rs orientation: forward

Symbol	Name	Function Class
Gm62503	predicted gene, 62503	1467 bp downstream
Kcnk5	potassium channel, subfamily K, member 5	Coding-NonSynonymous
Rr488235	regulatory region 488235	1815 bp proximal
Tssr127594	transcription start site region 127594	1599 bp downstream