rs30681078 SNP Detail

Summary

• ID
  rs30681078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:20191849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACGTGC CCCTGGGGTT
  ATCTGCCTTG TTGTATTCGT TCATCAGCTG CTCGTAAGGC ACGGAGAGCT CTGACTCGGT
  GCTGGTGAAG GTGGACTCAT CGGATGAAGG GAATTCACCC GTGCTGCTCA AGGGTGCCTC
  AGCCATGGGT CCCTGTTCAG GCTGCTCCTT TGAGGTCAGG TTGTCCTCCA CAGAAGACTT
  R
  GAGGTCTCCT CGTCTGAGAG GCCGGTTTCT TCATTTTCAA AGGTAATGTT GGCATTTTGG
  AAGATGAGCG GGTGGTAGTC CAGGGCTTCC CACGGCTCTC CCTCCTCACT GATACGGTCC
  AGTTGGTTAA TAAACACTTC AGAGGTTTGG TAACTATCCT TGGGGGCCTG TGCCCCAGCC
  TCCTCACCAA GTGGCCTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49160044	NES12454708	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30681078					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49160044	NES12454708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20191849 () rs orientation: forward

Symbol	Name	Function Class
Gm52125	predicted gene, 52125	1789 bp downstream
Gm62503	predicted gene, 62503	1775 bp downstream
Kcnk5	potassium channel, subfamily K, member 5	Coding-Synonymous
Tssr127594	transcription start site region 127594	1907 bp downstream