rs30681079 SNP Detail

Summary

• ID
  rs30681079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:20191410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAACCTG GGTCTTATGA
  GCTCCTCCTT CCAAATGTCT AGCTTAGTGC AAGGCACAAG GGCGTTGCCC ATTAACACTG
  GTGAACTCAG CTGAAGCTCC TGGCCTCAGA GAACCGTACA ACAGTCAACC GAGTGATGGG
  GGAAGACACA AGCAGCAAAC CCAGGACCTC CAGGGTGAGT GTTGCGGCCT ACGTGCCTGA
  R
  TCAGCAATAC ACCTGCCGGG CAGGCCCAGG ACAGCAGCCT CCCTACTGGG CCACAGAACG
  GAGGCCTGTC CTGGGCCAAC ACCACATCCC ATGGAAGCAA CCAAGTGGAG AGGACAGAAG
  GAAAGGCAGG TCCCTGGCTC CCCATCTCAT TTCCAGAGCC TTCTCCCTGG GGTCTGGCCA
  TCACAGGACA ATCCTCGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49160045	NES12454707	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30681079					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49160045	NES12454707	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20191410 () rs orientation: forward

Symbol	Name	Function Class
Gm52125	predicted gene, 52125	1350 bp downstream
Kcnk5	potassium channel, subfamily K, member 5	mRNA-UTR
Rr488234	regulatory region 488234	1672 bp distal