rs30681083 SNP Detail

Summary

• ID
  rs30681083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20190009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATAAAT CAAGCCAGCA
  AAAGATGGCT TTTATAGTTC CTGCCTCCAG GTTCTCGCCC TGGCTGCCCT TGATGATGGA
  AATATGTAAG CCAAATAACT TTTCCTCAGG TTGCTTTGGG GCAGAATATT GTCACGGCGC
  CAGAGTAAGT CAGAAGACCA TCTCCTTTGC CCCGCTCCTA GATGTTCTTG CTTATGTTTT
  Y
  CTCCTAAATC TCCACTTCAG CTCTATACTG ATCCTTCTGA CCTACAGACA TCAGCCTGTC
  CTTGCCCACC CCACGGCCCC ACCGTGCTCC CACCGCAAAC ATACCACACA CCAAGTGGGC
  TTGTTCATGT GTTTTATTGT AAAAAAATGT TAAAATAAAT TACATCTGCC TTCACCATCG
  GCACATGCAC ACAGCGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49160049	NES12454703	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30681083					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49160049	NES12454703	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20190009 () rs orientation: forward

Symbol	Name	Function Class
Gm52125	predicted gene, 52125	within coordinates
Kcnk5	potassium channel, subfamily K, member 5	116 bp downstream
Rr488233	regulatory region 488233	996 bp distal
Rr488234	regulatory region 488234	271 bp distal
Tssr127592	transcription start site region 127592	1422 bp upstream
Tssr127593	transcription start site region 127593	1375 bp upstream