rs30681877 SNP Detail

Summary

• ID
  rs30681877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20189284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCACTGT GGGACTGCTG
  GGGCTCTGGG CACCTCATGT GGCTTTTTAA GTGTACGCTG GGGACCAAAC TGCAGTCAGG
  GCCACTTGGC AAATGTTACC CATGAGTCAT CTTTCCAGGT CACAGGTTTT AAACAGGGTG
  CTCATGTCTC TGCTTCCAAA CTCCTTACGT TGGGAAAGTT CTGATTCACC CAGCTGGAGC
  Y
  GTGAGGCCCG TCTAGTGATG TCAGAACAAT CAAACCCCAC TAGCCATCTT CTCATCCCGG
  CACATTGGCT GTGGACTAGC CAGGAACTGT GCTGCCTGGA TTCAAAGCCA ACGTCTCCAT
  TTTTACTGTC TGCACAACTT GGTGCCTCAG ACACCTGTCT GCCTCCTGCT CCCTTTGCTT
  CTAGGGCAGG ACTGCTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49160053	NES12454755	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30681877					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49160053	NES12454755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20189284 () rs orientation: forward

Symbol	Name	Function Class
Gm52125	predicted gene, 52125	within coordinates
Kcnk5	potassium channel, subfamily K, member 5	841 bp downstream
Rr488233	regulatory region 488233	271 bp distal
Rr488234	regulatory region 488234	34 bp proximal
Tssr127592	transcription start site region 127592	697 bp upstream
Tssr127593	transcription start site region 127593	650 bp upstream