rs30681878 SNP Detail

Summary

• ID
  rs30681878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20189230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCCCTT GTGCTATGGA
  TAAAGCATCC ATCTGATTCC CGTTTCCAAC TCCAATCTCA CTGTGGGACT GCTGGGGCTC
  TGGGCACCTC ATGTGGCTTT TTAAGTGTAC GCTGGGGACC AAACTGCAGT CAGGGCCACT
  TGGCAAATGT TACCCATGAG TCATCTTTCC AGGTCACAGG TTTTAAACAG GGTGCTCATG
  Y
  CTCTGCTTCC AAACTCCTTA CGTTGGGAAA GTTCTGATTC ACCCAGCTGG AGCTGTGAGG
  CCCGTCTAGT GATGTCAGAA CAATCAAACC CCACTAGCCA TCTTCTCATC CCGGCACATT
  GGCTGTGGAC TAGCCAGGAA CTGTGCTGCC TGGATTCAAA GCCAACGTCT CCATTTTTAC
  TGTCTGCACA ACTTGGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49160054	NES12454753	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30681878					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49160054	NES12454753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20189230 () rs orientation: forward

Symbol	Name	Function Class
Gm52125	predicted gene, 52125	within coordinates
Kcnk5	potassium channel, subfamily K, member 5	895 bp downstream
Rr488233	regulatory region 488233	217 bp distal
Rr488234	regulatory region 488234	88 bp proximal
Tssr127592	transcription start site region 127592	643 bp upstream
Tssr127593	transcription start site region 127593	596 bp upstream