rs30682390 SNP Detail

Summary

• ID
  rs30682390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:117497129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGT TTTCTCCGCT CCCCCTTTTA
  Y
  GAGGAGCGCG CCTACCGACC ACTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46434592	mCV24800498	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss138889673	ENSMUSSNP2784443	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss324202005	CHEV_12_118771982	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30682390					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117497129 () rs orientation: forward

Symbol	Name	Function Class
2900082C11Rik	RIKEN cDNA 2900082C11 gene	1216 bp downstream
Cpgi5227	CpG island 5227	46 bp proximal
Gm60307	predicted gene, 60307	1555 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	Intron
Rr474129	regulatory region 474129	within coordinates
Rr474130	regulatory region 474130	420 bp proximal
Rr474131	regulatory region 474131	1179 bp proximal
Tssr115537	transcription start site region 115537	348 bp upstream
Tssr115538	transcription start site region 115538	411 bp upstream
Tssr115539	transcription start site region 115539	437 bp upstream