rs30687316 SNP Detail

Summary

• ID
  rs30687316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22038435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAG GAAAGTCGAT GCTGCAGAAA
  R
  TCTGCCCGCC CGCTTGGATT TCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss39210687	mCV22932333	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss324567176	CHEV_14_22807589	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30687316					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22038435 () rs orientation: forward

Symbol	Name	Function Class
A330001L22Rik	RIKEN cDNA A330001L22 gene	1254 bp upstream
Cpgi6225	CpG island 6225	1681 bp distal
Cpgi6226	CpG island 6226	within coordinates
Cpgi6227	CpG island 6227	552 bp proximal
Gm62264	predicted gene, 62264	1502 bp upstream
Rr488634	regulatory region 488634	1147 bp proximal
Rr488635	regulatory region 488635	1224 bp proximal
Tssr124462	transcription start site region 124462	1565 bp upstream
Tssr127699	transcription start site region 127699	858 bp upstream
Tssr127700	transcription start site region 127700	794 bp upstream
Tssr127701	transcription start site region 127701	485 bp upstream
Tssr127702	transcription start site region 127702	470 bp upstream
Tssr127703	transcription start site region 127703	358 bp upstream
Tssr127704	transcription start site region 127704	47 bp downstream
Tssr127705	transcription start site region 127705	1108 bp downstream
Zfp503	zinc finger protein 503	within coordinates