rs30688828 SNP Detail

Summary

• ID
  rs30688828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71659826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAGGCA AAGAGCTCAG
  TCAGAGGATG CATACCTATC ACACACTAGG TCCTAGTTTC AACCCACATA AAAGCTAAGT
  GTGGTGGCAC ACTCGTGTAA CCCCAACACT GGGGAGGTAG AGACTGGAGA ATTAGAAGTT
  GAAAATCATC CTCAGTGACT TTGAGTTTGT GGCCAGCCTG GGCTACAGGA GATACACATG
  Y
  GTGCATGGAT GTGCATGTGT ACGCATATAC ACAGACACAC AAAACATAAT AAAAATTATA
  AAACAAACCA GTAGAAACAA AAAGATGAAC TGTATCAGAG CCATCAAGTG CTCCTTGCTC
  CCTGATTGTG CCCCTGCACC CAGTCTTACA TATTATTCCA AGATTCTTCC CACTCACAAA
  TATTATCTCA CTTGGGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47971920	NES11919984	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30688828					SNP	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971920	NES11919984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71659826 () rs orientation: forward

Symbol	Name	Function Class
Rpl19-ps9	ribosomal protein L19, pseudogene 9	456 bp upstream
Tssr57037	transcription start site region 57037	426 bp upstream