rs30688830 SNP Detail

Summary

• ID
  rs30688830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71659871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGTCCTA GTTTCAACCC
  ACATAAAAGC TAAGTGTGGT GGCACACTCG TGTAACCCCA ACACTGGGGA GGTAGAGACT
  GGAGAATTAG AAGTTGAAAA TCATCCTCAG TGACTTTGAG TTTGTGGCCA GCCTGGGCTA
  CAGGAGATAC ACATGTGTGC ATGGATGTGC ATGTGTACGC ATATACACAG ACACACAAAA
  Y
  ATAATAAAAA TTATAAAACA AACCAGTAGA AACAAAAAGA TGAACTGTAT CAGAGCCATC
  AAGTGCTCCT TGCTCCCTGA TTGTGCCCCT GCACCCAGTC TTACATATTA TTCCAAGATT
  CTTCCCACTC ACAAATATTA TCTCACTTGG GTCAAGTGTC ACCTCTCCTG TAGAAAGCCT
  TCCTGTGGCT GTTGGTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47971922	NES11919985	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30688830					SNP	C	C	T	C	C	C	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971922	NES11919985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71659871 () rs orientation: forward

Symbol	Name	Function Class
Rpl19-ps9	ribosomal protein L19, pseudogene 9	411 bp upstream
Tssr57037	transcription start site region 57037	381 bp upstream