rs30689078 SNP Detail

Summary

• ID
  rs30689078
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71732964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAAAAAAG
  ACAGGGAAGA TTCCAGAAGA AAGCAGCATT GACAAAGGTA AGGTATCAAG AACGGGCAGG
  TAGAGCTTCC CCTGAAGATG GATCTCAGAT GCAGGCCTGA GAGTTAACTA CTCACTGACC
  CTAGTGAGAG AAGTGAAGGC AGAGGAGGTG TGCTGATGGG AGGAGATGTG GACCTGGTTA
  K
  ATTTGTGAAT ATGAAAGCTT ATGCTGGCTG CAAGATGCTG AGGCCAAATT CAATGATCCT
  AGGCTTCCAG CATCTGCTGG TGGAGATCAA CATCAGGAGA GGAAGCCATC CTTCCACAGA
  GCCTTAGCTG CTGTCTCCTC CTGTCTTAAC CTCCATAATT CTTGGTCGCC CTTCCATATT
  GCCCAAGCCA AGATAGAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47972698	NES11915203	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	T	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30689078					SNP	G	G	T	G	G	G	G	G	G	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47972698	NES11915203	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71732964 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	1302 bp upstream
Rr368099	regulatory region 368099	1682 bp upstream
Rr631995	regulatory region 631995	848 bp proximal
Rr631996	regulatory region 631996	1135 bp proximal