rs30689080 SNP Detail

Summary

• ID
  rs30689080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71733014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAAGGTA AGGTATCAAG
  AACGGGCAGG TAGAGCTTCC CCTGAAGATG GATCTCAGAT GCAGGCCTGA GAGTTAACTA
  CTCACTGACC CTAGTGAGAG AAGTGAAGGC AGAGGAGGTG TGCTGATGGG AGGAGATGTG
  GACCTGGTTA GATTTGTGAA TATGAAAGCT TATGCTGGCT GCAAGATGCT GAGGCCAAAT
  Y
  CAATGATCCT AGGCTTCCAG CATCTGCTGG TGGAGATCAA CATCAGGAGA GGAAGCCATC
  CTTCCACAGA GCCTTAGCTG CTGTCTCCTC CTGTCTTAAC CTCCATAATT CTTGGTCGCC
  CTTCCATATT GCCCAAGCCA AGATAGAAGG AAGTGTGTGG GTGGCTGTCT CAGGAAAAGG
  TGTTTCTAAG AATTATGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47972700	NES11915204	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30689080					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47972700	NES11915204	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71733014 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	1252 bp upstream
Rr368099	regulatory region 368099	1632 bp upstream
Rr631995	regulatory region 631995	798 bp proximal
Rr631996	regulatory region 631996	1085 bp proximal