rs30690726 SNP Detail

Summary

• ID
  rs30690726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71733725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGACTCCT CAGAAGTCCT
  GTCCCCATCC AAAGCTGTCC CCTGTCCAGA CCCTAAGTAT CAAAGTGAGG AAAGCAGCGA
  ACTGTAAGGA GAAACTGAAT CTGGGACTCG GGGTCAGGTG CCATGGTGAC TTCATCTCTC
  TGGCCAGTTC CCTCACCCGG GGAACTGCAG ACCACAGACC ACAGACCACC TTCTTCCCCC
  R
  GAGACGGCAC ACAGGTTTGA GAAGCCATGT GACCTGGGTT ATTACCTGGC TCGCTGGTTC
  TGACCCGCTT CCAGTCTGTC CTCCGACACC AGTTTTAGCC TGGTTGACGT GTCAGCTCTT
  TGAGGGTGGG GGTGTTCCTA ATCAGCTCTC TGCAGCACTT GGCAGAGAGC TGAGCCCATG
  GCAATGGAAA AGCAAAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47972716	NES11915212	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30690726					SNP	A	A	G	A	A	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47972716	NES11915212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71733725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr368098	regulatory region 368098			541 bp upstream
Rr368099	regulatory region 368099			921 bp upstream
Rr631995	regulatory region 631995			87 bp proximal
Rr631996	regulatory region 631996			374 bp proximal