rs30692831 SNP Detail

Summary

• ID
  rs30692831
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135144356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGA CAGGGAGACG GCAAGCGGGC
  K
  GCACGTCCAC TCGGCCCGAG CGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45455006	mCV22634530	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss135926094	ENSMUSSNP1071540	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss320971812	CHEV_3_135101559	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30692831					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135144356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			within coordinates
Cpgi13855	CpG island 13855			within coordinates
Rr367562	regulatory region 367562			295 bp downstream
Rr367563	regulatory region 367563			151 bp downstream
Rr398041	regulatory region 398041			1580 bp upstream
Rr585708	regulatory region 585708			555 bp distal
Rr585709	regulatory region 585709			351 bp distal
Rr585710	regulatory region 585710			20 bp distal
Rr585711	regulatory region 585711			7 bp proximal
Rr585712	regulatory region 585712			627 bp proximal
Rr585713	regulatory region 585713			772 bp proximal
Tssr1058	transcription start site region 1058			1667 bp downstream
Tssr31809	transcription start site region 31809			469 bp downstream
Tssr31810	transcription start site region 31810			442 bp downstream
Tssr31811	transcription start site region 31811			292 bp downstream
Tssr31812	transcription start site region 31812			205 bp downstream
Tssr31813	transcription start site region 31813			143 bp downstream
Tssr31814	transcription start site region 31814			110 bp downstream
Tssr31815	transcription start site region 31815			55 bp downstream
Tssr31816	transcription start site region 31816			11 bp downstream
Tssr31817	transcription start site region 31817			127 bp upstream
Tssr31818	transcription start site region 31818			431 bp upstream
Tssr31819	transcription start site region 31819			459 bp upstream
Tssr31820	transcription start site region 31820			494 bp upstream
Tssr31821	transcription start site region 31821			506 bp upstream
Tssr31822	transcription start site region 31822			789 bp upstream
Tssr31823	transcription start site region 31823			847 bp upstream
Tssr31824	transcription start site region 31824			875 bp upstream
Tssr35782	transcription start site region 35782			589 bp upstream
Tssr35783	transcription start site region 35783			7 bp downstream
Tssr35784	transcription start site region 35784			62 bp downstream
Tssr35785	transcription start site region 35785			1776 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant