rs30692957 SNP Detail

Summary

• ID
  rs30692957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20724999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGCTTATT CGGTCCCTCA GCCTCCTTCA GGAAATTAAA
  GGGAGAGGGA CGTTTCCCAG GCTTGATGTT GGTGGCATGT GCAACGTTTA GCGTTTGGAA
  R
  GACTGTTCTA AAATGGCTTT GACTTTACAG AGTTTTCAGT CCGGCAGCGG TTTAGCTTCT
  GGGCTCTCCT AGCAAAGAGA AACCTATTGT TCTACTGCAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49162245	NES12530894	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30692957					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162245	NES12530894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20724999 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	720 bp upstream
Cpgi6207	CpG island 6207	119 bp distal
Rr287464	regulatory region 287464	1599 bp distal
Rr296876	regulatory region 296876	within coordinates
Rr389336	regulatory region 389336	within coordinates
Sec24c	SEC24 homolog C, COPII coat complex component	within coordinates
Tssr124386	transcription start site region 124386	624 bp downstream
Tssr124387	transcription start site region 124387	560 bp downstream
Tssr124388	transcription start site region 124388	372 bp downstream
Tssr127653	transcription start site region 127653	805 bp upstream
Tssr127654	transcription start site region 127654	215 bp upstream