rs30692958 SNP Detail

Summary

• ID
  rs30692958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20724867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTCGCCC TCCCAGCATG
  TTGAAGGGCA TTAGAGGATT GGTCTTTACT GCTTAGTGAA CCGGCCCTCT TCGTGGCCCT
  AGAGGCTGGC TTGGCTTCCG GATCTCGATC TCTGGAGCGC TCAAGCCTCC GCATCTCGGG
  TACTTTCAGA GTTCTAGGAA GCTTGCCCCG CCCCTTTCGG TTGTCACCCT CGGCTATCCC
  Y
  CTAGAATGGA GTCAAGATTG GAGTTTGACT CTGAGCTTAT TCGGTCCCTC AGCCTCCTTC
  AGGAAATTAA AGGGAGAGGG ACGTTTCCCA GGCTTGATGT TGGTGGCATG TGCAACGTTT
  AGCGTTTGGA AGGACTGTTC TAAAATGGCT TTGACTTTAC AGAGTTTTCA GTCCGGCAGC
  GGTTTAGCTT CTGGGCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49162246	NES12530893	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30692958					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162246	NES12530893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20724867 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	588 bp upstream
Cpgi6207	CpG island 6207	within coordinates
Rr287464	regulatory region 287464	1467 bp distal
Rr296876	regulatory region 296876	within coordinates
Rr389336	regulatory region 389336	within coordinates
Sec24c	SEC24 homolog C, COPII coat complex component	within coordinates
Tssr124386	transcription start site region 124386	492 bp downstream
Tssr124387	transcription start site region 124387	428 bp downstream
Tssr124388	transcription start site region 124388	240 bp downstream
Tssr127653	transcription start site region 127653	673 bp upstream
Tssr127654	transcription start site region 127654	83 bp upstream