rs30692961 SNP Detail

Summary

• ID
  rs30692961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20724353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGTC TGGAAAATGT
  GGAAAAATCT GGAAAGGAAA GAAAAAAAAA AAAAAAAAAA AAAGCATGAA ACTCAGCAAT
  ACTTTACAGA CTGCGTCCAT GACGGGATAC ACCACATACG CATGCGCAAC ATCCGGGTTT
  CCGGAAGCGT GCCTAAGGCC GACGTGGCAG AAGGAGTGGC CTAGCCCTAG AGCATGGGGC
  R
  GAACTTCCGG GGACGGCACG CCAGCCCCCC CCCCCTCGGA ACCGGAAGTT GAGCCTGGGA
  GCCTTGACGT TAGGAACGAA GTCGAACCTG GATCTGGAGC CGGGTGAGGA GTGGCATCGC
  GAGGTTGCGT GGTGGGGAGG AATGCTGAGG AGAGGCCAGG GTATTTTTGG CCTGATCGCT
  GTCCGGTTTT AGAGGAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49162249	NES12530890	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30692961					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162249	NES12530890	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20724353 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	74 bp upstream
Cpgi6207	CpG island 6207	within coordinates
Rr287464	regulatory region 287464	953 bp distal
Rr296876	regulatory region 296876	within coordinates
Rr389336	regulatory region 389336	within coordinates
Sec24c	SEC24 homolog C, COPII coat complex component	23 bp upstream
Tssr124386	transcription start site region 124386	13 bp upstream
Tssr124387	transcription start site region 124387	26 bp upstream
Tssr124388	transcription start site region 124388	211 bp upstream
Tssr127653	transcription start site region 127653	159 bp upstream
Tssr127654	transcription start site region 127654	423 bp downstream