rs30693271 SNP Detail

Summary

• ID
  rs30693271
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44059986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTA CCCTCTTAAC TCCCCTCCCC
  S
  TGCCCTAAAT AAACTCTATT CTATA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44953716	mCV24575381	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30693271					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44059986 () rs orientation: forward

Symbol	Name	Function Class
Chuk	conserved helix-loop-helix ubiquitous kinase	1788 bp downstream
Cpgi10883	CpG island 10883	1373 bp distal
Erlin1	ER lipid raft associated 1	1762 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	1677 bp distal
Rr548151	regulatory region 548151	1286 bp distal
Rr548152	regulatory region 548152	1049 bp distal
Tssr159430	transcription start site region 159430	1872 bp upstream
Tssr159431	transcription start site region 159431	1839 bp upstream
Tssr159432	transcription start site region 159432	1760 bp upstream