rs30693453 SNP Detail

Summary

• ID
  rs30693453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138890971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA GAACGACACT CTAGGGGGCC
  Y
  GCTACTGTGT GTTCAAAAGT TAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss44953343	mCV22515264	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss320001739	CHEV_1_140859810	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30693453					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138890971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi831	CpG island 831	within coordinates
Dennd1b	DENN domain containing 1B	476 bp upstream
Gm37045	predicted gene, 37045	330 bp upstream
Rr28649	regulatory region 28649	within coordinates
Rr28650	regulatory region 28650	1629 bp proximal
Rr396345	regulatory region 396345	1088 bp upstream
Tssr9165	transcription start site region 9165	184 bp upstream
Tssr9166	transcription start site region 9166	396 bp upstream
Tssr9167	transcription start site region 9167	484 bp upstream