rs30693645 SNP Detail

Summary

• ID
  rs30693645
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10183359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC AGAAGCCTTA GGGCTGCTTA
  M
  CCTGGAATGC GTGTTACAGT GACCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44953822	mCV23259609	ABI	CRAMUS_MOUSE	f	SNP	C								A
ss50603780	NES13643279	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A	A	A	A	A		A	C	C	A		A
ss146041378	ENSMUSSNP6964950	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							A
ss325720141	CHEV_19_10280485	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30693645					SNP	C	C	A	C	A	C	A	A	A	A	A	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50603780	NES13643279	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10183359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10601	CpG island 10601	1522 bp distal
Fen1	flap structure specific endonuclease 1	1826 bp upstream
Rr356596	regulatory region 356596	442 bp proximal
Rr361277	regulatory region 361277	1486 bp proximal
Rr362959	regulatory region 362959	558 bp distal
Rr405855	regulatory region 405855	1640 bp downstream
Tmem258	transmembrane protein 258	within coordinates
Tssr155037	transcription start site region 155037	1804 bp downstream
Tssr155038	transcription start site region 155038	1758 bp downstream
Tssr155039	transcription start site region 155039	1746 bp downstream
Tssr155040	transcription start site region 155040	465 bp upstream
Tssr158167	transcription start site region 158167	1582 bp upstream