rs30693855 SNP Detail

Summary

• ID
  rs30693855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20723512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTA AAGCATAACA GCACAGAAAG
  R
  ATTCCAATGC ATGCAACGGA GAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss39274782	mCV23001717	ABI	CRAMUS_MOUSE	f	SNP	G	A	A					G
ss49162253	NES12530939	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	G	G		G	G	G		A
ss139195105	ENSMUSSNP5989051	ENSEMBL	ENSEMBL_Sanger	f	SNP			A					G
ss324564663	CHEV_14_21492666	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30693855					SNP	G	A	A	A	A	G	A	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162253	NES12530939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20723512 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	within coordinates
Cpgi6207	CpG island 6207	701 bp proximal
Rr287463	regulatory region 287463	1312 bp distal
Rr287464	regulatory region 287464	112 bp distal
Rr291720	regulatory region 291720	1712 bp distal
Rr296876	regulatory region 296876	88 bp proximal
Rr389336	regulatory region 389336	320 bp upstream
Sec24c	SEC24 homolog C, COPII coat complex component	864 bp upstream
Tssr124386	transcription start site region 124386	854 bp upstream
Tssr124387	transcription start site region 124387	867 bp upstream
Tssr124388	transcription start site region 124388	1052 bp upstream
Tssr127653	transcription start site region 127653	670 bp downstream
Tssr127654	transcription start site region 127654	1264 bp downstream