rs30693959 SNP Detail

Summary

• ID
  rs30693959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:6704623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT AGAATGTCAG TATGCTAGGA
  Y
  TTTTTTTTTT CTTACCTGGT ACTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44953251	mCV23851632	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		T
ss47098305	NES11134392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T		T	T	C	C	C	C	C	T	T
ss148501873	ENSMUSSNP3312980	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30693959					SNP	C	C	C	C	C	T	C	T	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47098305	NES11134392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6704623 () rs orientation: forward

Symbol	Name	Function Class
St18	suppression of tumorigenicity 18	within coordinates
Tssr5859	transcription start site region 5859	6 bp upstream
Tssr5860	transcription start site region 5860	1571 bp upstream
Tssr5861	transcription start site region 5861	1598 bp upstream