rs30693963 SNP Detail

Summary

• ID
  rs30693963
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74317561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCCAGACCT GGCCTTCGGG AGCCTCTCAC CCAGTGGCTG GCCAGTTACT GTCCTCTCTT
  GGCACCCTGA TGTGGGTAGG CAAAGATTGA CAGATGCTTT GGGTAGGTTG CCTTCCAGTC
  TAGACAGGCA TAAACATAGC TGCCCAGGGG CTGCAGGATG GCTGAGAGGC GAAGCTGCCT
  GTGGGAACTG TGGTTATCGC CTGAAGTGTA GCCTCTTCTA AGATAACACC AGAATTGATT
  TTCCAAGAAA ACCCAAAAGC AAGACTTCCC TATGCAGTTG GTTTTTTTTA GTTGGTTTTT
  K
  TTTTTTTTTT TTTTAAGTTG GCAACTGAAA AAAATCTGTA TCAGAAAAAA AAGGTATGGC
  TCAGAGTCTG AGTCCAAAGC CTCAGTGATA ATGTGCTGTC CCCACCTGGG CAGTGACTGC
  AGGACCAACC TAACTCTGGC CACTCCTCCA TCCAGGCATG CTTTCTGCAG CTCCGGACCC
  TCCATGTGCC AAGACCCATG ATGACACCCA ACAGCACTGA GCTGTCGGCC ATTCCCATGG
  GGGTTCTGGG GCTTTCCTTG GCCCTGGCAA GCCTCATCGT CATCGCCAAC CTGCTCCTGG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44953255	mCV23129154	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	T
ss144685957	ENSMUSSNP5382906	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30693963					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74317561 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	1438 bp downstream
Gpbar1	G protein-coupled bile acid receptor 1	148 bp upstream
Rr17376	regulatory region 17376	840 bp proximal
Tssr7370	transcription start site region 7370	1282 bp downstream