rs30694720 SNP Detail

Summary

• ID
  rs30694720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47886051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGT AATGGTGAGT CTGATTCTAT
  Y
  TCTCTACCCC ACACTCTAGA AGCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss39211567	mCV25282780	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss139408791	ENSMUSSNP5398022	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
ss324597834	CHEV_14_48268269	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs30694720					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47886051 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	190 bp proximal
Ktn1	kinectin 1	500 bp upstream
Rr297095	regulatory region 297095	within coordinates
Tssr125321	transcription start site region 125321	167 bp downstream
Tssr125322	transcription start site region 125322	124 bp downstream
Tssr125323	transcription start site region 125323	508 bp upstream
Tssr125324	transcription start site region 125324	699 bp upstream
Tssr125325	transcription start site region 125325	1792 bp upstream
Tssr128337	transcription start site region 128337	620 bp downstream