rs30695410 SNP Detail

Summary

• ID
  rs30695410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86828291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCGGCTCT ACGGTCCAAG GAGGCCCCGC CCGCCCGCCG
  GGCTACCGGA GCTGCGCGCT CCCGGGCGTG ACCGCGCTGC GCGCTCCACA AGCGCGGGGG
  Y
  TAGCGCAACC GCGCTAGGCA AAAGAAAAAA AAAAAAAGCC TACAAAGGAA GGAGACTCAA
  GGGCAGCAAG CACATCCTTA TCCTGCCTCC TGGGGAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45455523	mCV25352017	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135451264	ENSMUSSNP3822373	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320830117	CHEV_3_86724906	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30695410					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86828291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13328	CpG island 13328	within coordinates
Cpgi13329	CpG island 13329	449 bp proximal
Dclk2	doublecortin-like kinase 2	132 bp upstream
Rr77821	regulatory region 77821	within coordinates
Tssr33913	transcription start site region 33913	636 bp upstream
Tssr33914	transcription start site region 33914	594 bp upstream
Tssr33915	transcription start site region 33915	571 bp upstream
Tssr33916	transcription start site region 33916	449 bp upstream
Tssr33917	transcription start site region 33917	419 bp upstream
Tssr33918	transcription start site region 33918	7 bp upstream