rs30696014 SNP Detail

Summary

• ID
  rs30696014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56960934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGATTT CATCTTTACC
  TTGACATTTT GGGCTTTCTC GGTCATTCTC TGAAGCTCTC TCCCTCTGTA CTATTCCTCA
  TTGCTGTACA TGCTGACTTT ACCAGACTCT AGCTCAAATG GTATGGCTTC CTCTCTTCTT
  CCCCATCATC CTCCCAGTAG CTGCTGGGAT TTTCAATTTG CCAACCTTAT TGTTTTTCTT
  Y
  CAAACTCTAT TGAAAAGATA ATTGAGCTTC CTTCTTGAAT CTGTTTCAAT AAATATTTTT
  AAAATTTATT CTTCTCTTAT ATATGACACA TGACCACAGT TACCCCTCCC ATCTCTCTTC
  TCAGTCTCTC CCCCACCATC TCCCCTTCCC CCCAGATCCA CTCTTCCTCC TCTCTCTTCA
  GAAAGGGGTA GATTTCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46975434	NES10787144	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30696014					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46975434	NES10787144	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56960934 () rs orientation: forward

Symbol	Name	Function Class
Gm22269	predicted gene, 22269	637 bp upstream