rs30696232 SNP Detail

Summary

• ID
  rs30696232
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146154400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGTAGAC TTGCCCAACC
  CATTGAGATT GCCGAGTGGA GTGGAGGCGC CGTGGCCCGG GGATGCTGTG CAGTTTTACA
  GGAGCCGACA GATTACTTGC TCAAAGGCCA GATAAGGACG GGCTCTGGGG CAGCTTGAAG
  ACTTCCCCGC CCTGATGGAG AGTGGAGACG ACTTGGCATC CATGTTAAGG TTGCTGACGT
  S
  GAGCTACATT GTCCAGGGTG AAATCTTAGC TCCACGCCTT ACCACTGAGG CACATACCAG
  GTTTTAGGTG GAAAACCCCT GAAGAACAAG AGTACCTATT AAGGCAAGGT CAGGCCAAAC
  CCCTGCTTCA CACTTAGCAT CATCAGATCC TCGGAACATC CGCCTGTGGG TCAGCTTCGC
  TGCCCGTAAG ACAAGGCTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss45455242	mCV24075058	ABI	CRAMUS_MOUSE	f	SNP		C					G
ss47027432	NES10840705	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	G	C		G	G	G	G		G	C	G
ss136044552	ENSMUSSNP4232406	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321010449	CHEV_3_146111609	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30696232					SNP	G	C	G	C	G	C	G	G	G	G	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027432	NES10840705	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146154400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	1684 bp proximal
Ctbs	chitobiase	1804 bp upstream
Rr398117	regulatory region 398117	1668 bp upstream
Rr587028	regulatory region 587028	706 bp distal
Rr587029	regulatory region 587029	1335 bp proximal
Tssr32348	transcription start site region 32348	1822 bp upstream
Tssr32349	transcription start site region 32349	1873 bp upstream