rs30696396 SNP Detail

Summary

• ID
  rs30696396
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14950914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT TTAAATAAAA ATACACAAAA
  W
  GAACATTGAA AGGTGTGTCC CCGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45455437	mCV23564324	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss134618297	ENSMUSSNP1351408	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss320667955	CHEV_3_14885854	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30696396					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14950914 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	419 bp upstream
Cpgi12992	CpG island 12992	161 bp proximal
Rr573722	regulatory region 573722	133 bp proximal
Rr573723	regulatory region 573723	285 bp proximal
Rr573724	regulatory region 573724	585 bp proximal
Rr573725	regulatory region 573725	632 bp proximal
Rr573726	regulatory region 573726	1315 bp proximal
Rr573727	regulatory region 573727	1368 bp proximal
Rr573728	regulatory region 573728	1550 bp proximal
Tssr826	transcription start site region 826	350 bp upstream
Tssr827	transcription start site region 827	564 bp upstream
Tssr828	transcription start site region 828	580 bp upstream
Tssr829	transcription start site region 829	670 bp upstream
Tssr830	transcription start site region 830	751 bp upstream
Tssr831	transcription start site region 831	772 bp upstream
Tssr832	transcription start site region 832	861 bp upstream
Tssr28466	transcription start site region 28466	829 bp upstream
Tssr28467	transcription start site region 28467	961 bp upstream
Tssr28468	transcription start site region 28468	1534 bp upstream