rs30696581 SNP Detail

Summary

• ID
  rs30696581
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGTCCTACC GTGGACATTT CTAAATTTTC CACCTTTTTC AGTTTTCCTC ACCATATTTC
  ACGTCCTAAA GTGTGTATTT CTCATTTTCC GTGATTTTCC GTTTTCGCGC CATGTTTTAG
  GTCCTACAGT GTGCATTTCT CATTTTTCAG GTTTTTCAGT AATTTCGTCA TTTTTTAAGT
  CGTCAAGTGG ATGTTTCTCA TTTTCCATTA TTTTCAGTTT TCTTGCCATA TTCCATGTCC
  TACCGTGGAC ATTTCTAAAT TTTCCACCTT TATCAGTTTT CCTCACCATA TTTCACGTGT
  K
  AAAGTGTGTA TTTTTCATTT TCCGTGATTT TCAGTTTACT CGCCATATTC TAGGTCCTAC
  AGTGTGCATT TCTCATTTTT CACGTTTTTC AGTGATTTCA TCATTTTTCA AGTCGTCAAA
  AGCATGATTC TCATTTTCTA TGATTTTCAG TTTTCTTGCC ATATTCCATG TCCTACAGTG
  GATATTTCTA AATTTTCCTC CTTTTTCAGT TTTCCTAGCC ATATTTCACG TCGTAAAGTG
  TGTATTTCTC ATTTTCCGTG ATTTTTATTT TTCTTGCCAT ATTCCAGGTC CTACAGTGTG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46434868	mCV25366731	ABI	CRAMUS_MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30696581					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1491 bp distal
Cpgi21324	CpG island 21324	219 bp distal
Cpgi21325	CpG island 21325	1988 bp proximal
Rr673606	regulatory region 673606	869 bp distal
Rr673607	regulatory region 673607	389 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	482 bp proximal
Rr673610	regulatory region 673610	1482 bp proximal
Tssr83578	transcription start site region 83578	1909 bp downstream
Tssr83579	transcription start site region 83579	1867 bp downstream
Tssr83580	transcription start site region 83580	1771 bp downstream
Tssr83581	transcription start site region 83581	1526 bp downstream
Tssr83582	transcription start site region 83582	904 bp downstream
Tssr83583	transcription start site region 83583	717 bp downstream
Tssr83584	transcription start site region 83584	630 bp downstream
Tssr83585	transcription start site region 83585	254 bp downstream
Tssr83586	transcription start site region 83586	40 bp upstream
Tssr83587	transcription start site region 83587	356 bp upstream
Tssr83588	transcription start site region 83588	1972 bp upstream
Tssr88018	transcription start site region 88018	1841 bp upstream
Tssr88019	transcription start site region 88019	679 bp upstream
Tssr88020	transcription start site region 88020	611 bp upstream
Tssr88021	transcription start site region 88021	within coordinates
Tssr88022	transcription start site region 88022	76 bp downstream