rs30696946 SNP Detail

Summary

• ID
  rs30696946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20707139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGGCTG GAGGGGACCC
  ATGAGTGTAT TTGTGGGTGG GAGGGATTAA AGCCCTAAGT TGAAGATAGG ATGGAAATTT
  TCACAGTGGC ATTGCTTCTA ACTTCCTGAA TAGGTTGGCT TTCTGTCTAA GAGGGTTAGA
  TCTTGACAGG GTGAGGAACC AACTTAGTGA ACCCTAGTGC AGATGATCTT ACAAAGGCCC
  R
  TGGGTACTCT CAACCTGTGG GTCCTGACCC CCATGGGGGG TCAAACAACC CTTTCATAGG
  GGTCAATGTC AGATATCTCA AATATAGATA TTTACATTAT AATTCATAAC AGTAGCAAAA
  TTACAGTTAT GAAGTAGCAA CAAAAATAAT TTTATGATGC CAAGCATGGT GGGTGGTGCA
  CACCTTTAAT CCTAGCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49162288	NES12531613	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30696946					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162288	NES12531613	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20707139 () rs orientation: forward

Symbol	Name	Function Class
Myoz1	myozenin 1	531 bp upstream
Rr488338	regulatory region 488338	413 bp distal
Rr488339	regulatory region 488339	1315 bp proximal
Rr488340	regulatory region 488340	1421 bp proximal
Synpo2l	synaptopodin 2-like	1875 bp downstream
Tssr124385	transcription start site region 124385	1798 bp downstream
Tssr127644	transcription start site region 127644	563 bp upstream