rs30696947 SNP Detail

Summary

• ID
  rs30696947
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:20705670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTACAGC CGTACACTTG
  GGATTAAGGA CAAAATTTCT TCAGTTTTTT TTCCATGTGC ATGTTTGCAT GTGTGTGTGC
  ACGCATGCAT ACGTCTTTAC AGAAATTAGT ATTCCCCAGA ACGTAAACTG TCACAGTCTT
  CTGTTTTCTT TGGAAGCAGG ACAGGAGGAA GAACTGTACC CTTTCCTTAT CTCTTACCAA
  S
  GGCTGTGTCC ACTTTCCATA GCTCCTGTGT GGGCATCGGA AATACAGCTA GGGCCGAAGG
  GGGTTTCAAA AGCAACACTG GCAGAGCAAT GCACTCAGGC TTCCTGGGCC TGGCGTGACT
  TAAAGTCCTT ATTTGTATCG GGATATCAGA CTACAACTGT GGCTCCAGAC TCTAGTCTCC
  TCCTTAGGCT TCCCTTGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49162289	NES12531612	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30696947					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162289	NES12531612	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20705670 () rs orientation: forward

Symbol	Name	Function Class
Myoz1	myozenin 1	Intron
Rr488338	regulatory region 488338	928 bp proximal
Tssr124385	transcription start site region 124385	329 bp downstream
Tssr127644	transcription start site region 127644	886 bp downstream