rs30696948 SNP Detail

Summary

• ID
  rs30696948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:20705142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTATTTTA AATGCTTACA
  CAAGTTCCCT AACACTTAGA AAGAAATAAG GAAGTTAACC ATTTGGTGAG GCCTAGCCTG
  TGTTCTCACA GGACTTGACT GACTATGGGT CCTGCTAAAA TGTCCAGTAT CTTAGCAGGG
  TGTTGTCTCA GAGTAATCAA TGGGAAGGAT GGGAGGATGC AGAGTGGATG CTGAGTTCTT
  Y
  CTGTGTCTTT CTCCTGCCCC TTCTCACCCC TCCCATCATC CCGTCTCCCA CACCCTCTAC
  AGCTGCAATT CCTCTTGTTT TTTTTTTTTT TTTTTTTTTT CACTCTGACT TATATCCTGT
  CTTACATCAT TTCTGGGACT CTTGAGTCAG GCATGCTCTT AAAAGTCCTG CATTGGGGCT
  CTACAAGCAC GCACACCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49162290	NES12531611	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30696948					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162290	NES12531611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20705142 () rs orientation: forward

Symbol	Name	Function Class
Myoz1	myozenin 1	Intron
Rr488338	regulatory region 488338	1456 bp proximal
Tssr124385	transcription start site region 124385	167 bp upstream
Tssr127644	transcription start site region 127644	1414 bp downstream