rs30696949 SNP Detail

Summary

• ID
  rs30696949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:20705081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGGGGAA CTTCACACTT
  GGCAACTCGT GCGCATCCCC AGGGAGTGTG GCTGTGTAGT TTCCTATTTT AAATGCTTAC
  ACAAGTTCCC TAACACTTAG AAAGAAATAA GGAAGTTAAC CATTTGGTGA GGCCTAGCCT
  GTGTTCTCAC AGGACTTGAC TGACTATGGG TCCTGCTAAA ATGTCCAGTA TCTTAGCAGG
  R
  TGTTGTCTCA GAGTAATCAA TGGGAAGGAT GGGAGGATGC AGAGTGGATG CTGAGTTCTT
  CCTGTGTCTT TCTCCTGCCC CTTCTCACCC CTCCCATCAT CCCGTCTCCC ACACCCTCTA
  CAGCTGCAAT TCCTCTTGTT TTTTTTTTTT TTTTTTTTTT TCACTCTGAC TTATATCCTG
  TCTTACATCA TTTCTGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49162291	NES12531610	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30696949					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162291	NES12531610	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20705081 () rs orientation: forward

Symbol	Name	Function Class
Myoz1	myozenin 1	Intron
Rr488338	regulatory region 488338	1517 bp proximal
Tssr124385	transcription start site region 124385	228 bp upstream
Tssr127644	transcription start site region 127644	1475 bp downstream