rs30697678 SNP Detail

Summary

• ID
  rs30697678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32452366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTG CAATCCAAGA ATCTACCACC
  R
  TGTCTGTGAA TTCAAGTTGT AAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45455544	mCV24283435	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss134749298	ENSMUSSNP4287298	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320698068	CHEV_3_32297139	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30697678					SNP	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32452366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13056	CpG island 13056			144 bp distal
Gm56797	predicted gene, 56797			1022 bp downstream
Gm65709	predicted gene, 65709			1250 bp upstream
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha			Intron
				Noncoding-Transcript-Variant
Rr397633	regulatory region 397633			1064 bp downstream
Rr574952	regulatory region 574952			1554 bp distal
Rr574953	regulatory region 574953			1142 bp distal
Rr574954	regulatory region 574954			536 bp distal
Rr574955	regulatory region 574955			805 bp distal
Rr574956	regulatory region 574956			within coordinates
Tssr28746	transcription start site region 28746			1130 bp downstream
Tssr28747	transcription start site region 28747			1073 bp downstream
Tssr28748	transcription start site region 28748			1038 bp downstream
Tssr28749	transcription start site region 28749			952 bp downstream
Tssr28750	transcription start site region 28750			921 bp downstream
Tssr28751	transcription start site region 28751			243 bp upstream
Tssr32929	transcription start site region 32929			within coordinates