rs30699516 SNP Detail

Summary

• ID
  rs30699516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127292560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGGCCAG GGGAGGTGGG
  AGAAGCCATG TCCACGCTCT CGGAACTCCT TCCCTCGGTC AAGTCCGGCT GTCCCGCGTG
  TCCTCGTCTC TTCCGCTCCC GGCCTGCGGC GTTCGGGCTC ACCCGGGGAC CCGCGTGCTT
  CTAGGCGACC GCAGAAGGTC GGCCTTGGCC GCGATCGCCC GTGGAGACCT GCTGCCCGAG
  Y
  CCACCTACCT CTGCGCGAGG TGCCGTGGGG CCATGGTGCG CCGAGTGGGC TGCGGGCTGG
  GCCGGCGACA AGCGCTAAGC GACTGCTGCT GGTGGCGCGG GGAGAAAGAG GAGGGCTTCT
  TCCTTCGCCG CGCGCCGGGA GAGCGATGAG CTCATGGACA GCTCCCAGAA ATATGTCTAT
  ATGCACCACT GCCTGCCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45455866	mCV24304142	ABI	CRAMUS_MOUSE	f	SNP	T		C	C
ss135865098	ENSMUSSNP5185012	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320954688	CHEV_3_127201829	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30699516					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127292560 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	within coordinates
Rr584800	regulatory region 584800	80 bp proximal
Tssr35576	transcription start site region 35576	75 bp downstream
Tssr35577	transcription start site region 35577	138 bp downstream
Tssr35578	transcription start site region 35578	165 bp downstream
Tssr35579	transcription start site region 35579	184 bp downstream