rs30700649 SNP Detail

Summary

• ID
  rs30700649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:32977311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGAACA CTTTTCTGTG
  GCTTTGTTCT TAGGATTTTT TTCCCCACGA GAGAGTAAAC TTATATTTGT TAAATTCCCT
  CAAGGATTTG GGCATTTTTG TTGTAATTCT TCAGTTCTCA TGGCTACACT AAAATCAAGC
  TCCTTTACTG TCATTTTGAA AGGCATAAGA GGAAAATTGT CAGTGCCCTG ACCAAGCATC
  R
  TGGAAGTGAC ATTCATGTTT GTCTACTGCT AAGTCATTTG CTTATCCTTA ACCCAAACTA
  TTTACAGACC TCTGTAAATT ACTCTGTAGG CCTCCGGCTA TAGAATTACA AAATGCAATG
  AAGTTGAGGA AAGTGCCTAC AGGCATGGAA CAAACAAAGT TTGGATGTAG GCGACTGAAA
  CAGTGTTTAA GGTCGGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39212099	mCV22706760	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A	A
ss62258298	NES17204624	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A	A		A	A	G	A	G	G
ss139248748	ENSMUSSNP5602567	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30700649					SNP	G	G	A	A	A	A	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62258298	NES17204624	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:32977311 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgap22	Rho GTPase activating protein 22			Intron
				Noncoding-Transcript-Variant
D14Mit175	DNA segment, Chr 14, Massachusetts Institute of Technology 175			857 bp proximal