rs30701916 SNP Detail

Summary

• ID
  rs30701916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129156075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATGACAGCA TTGCATACAC TAGCAAGCGT TTGCTGCAAG GAACCTGATA TAGCTGTCTC
  TTGTGAGACT AGGCCGGGGC CTAGCAAACA CATAAGTGGA TGCTCTCAGT CAGCTATTGG
  ATGGATCACA GGGCCCCCAA TGGAGGAGCT AGAGAAAGTA TCCAAGGAGC TAAAGAGATC
  TGCAACCCTG TAGGTGCAAC ATTATGAACT AACCAGTACC CCGGAGCTCT TGACTCTAGC
  TGCATATGTA TCAAAAGATG GCCTGGTCGG CCATCACTGG AAAGAGAGGC CCATTGGACA
  Y
  GCAAACTTTA TATGCCCCAG TACAGGGGAA TGCCAGGGCC AAAAAAATGG GAATGGGTGG
  GTAGGAAAGT GGGGGGCAGG GTGTGGGGGA CTTTTGGGCT AGCATTGGAA ATATAATTGA
  GGAAAATATG TAATAAAAAA AAGAGTTGAC AGCTTTCTTT CAAAACTTTA ACCAAGACAA
  ATTAATAAGT AAGTTACAGT TGTATTTTTT CAAAGGAGAT GGACTCAGGG CTTAAAAGCT
  CTTGCCACAT AATCCTGACC ATCTGGCCTG GATCACAGGA GAACAGGGCA GCAGGAGAGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45954887	mCV24120180	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30701916					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129156075 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	1503 bp upstream
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	within coordinates
Rr368193	regulatory region 368193	1225 bp upstream
Rr639386	regulatory region 639386	183 bp proximal
Rr639387	regulatory region 639387	1013 bp proximal
Rr639388	regulatory region 639388	1359 bp proximal
Rr639389	regulatory region 639389	1514 bp proximal
Tssr59096	transcription start site region 59096	1501 bp upstream
Tssr59097	transcription start site region 59097	1527 bp upstream
Tssr59098	transcription start site region 59098	1805 bp upstream
Tssr59099	transcription start site region 59099	1839 bp upstream
Tssr59100	transcription start site region 59100	1863 bp upstream