rs30704571 SNP Detail

Summary

• ID
  rs30704571
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAA TGCATTTTTC AAAAGAAAAA
  W
  TTTTTTTATT AGTCCTTTAA GATGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45458408	mCV24793264	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss320896722	CHEV_3_116608267	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30704571					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698998 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			774 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			849 bp distal
Rr583801	regulatory region 583801			1208 bp distal
Rr583802	regulatory region 583802			967 bp distal
Rr583803	regulatory region 583803			619 bp proximal
Tssr31391	transcription start site region 31391			1743 bp downstream
Tssr31392	transcription start site region 31392			1661 bp downstream
Tssr31393	transcription start site region 31393			1634 bp downstream
Tssr31394	transcription start site region 31394			1597 bp downstream
Tssr31395	transcription start site region 31395			951 bp downstream
Tssr31396	transcription start site region 31396			1024 bp upstream